CV

Summary of relevant experience and research

Contact Information

Name Muhammad Faizan
Professional Title PhD Candidate (Research Assistant)
Email mfaizan@tcd.ie
Location Dublin, Ireland

Professional Summary

My primary research interest lies in MRI reconstruction with classical and advanced deep learning models, in particular, joint MRI reconstruction and motion correction, specifically in infants.

Education

  • 2025 - present

    Dublin, Ireland

    Doctor of Philosophy (PhD)
    Trinity College Dublin (TCD)
    Psychology
    • Thesis: Joint Reconstruction and Motion Correction of Infant Functional MRI Using Physics-Informed Deep Neural Networks
    • Advisor: Prof. Rhodri Cusack
  • 2022 - 2025

    Islamabad, Pakistan

    Master of Science (MS)
    National University of Sciences and Technology (NUST)
    Robotics and Intelligent Machine Engineering
    • Thesis: Hybrid 3D Neural Network Architecture for Multi-Modal MRI Brain Tumor Segmentation
    • Advisor: Dr. Sara Baber Sial
    • Recipient of the NTF Merit Scholarship and the Prime Minister High Achievers Award (2023)
  • 2016 - 2020

    Peshawar, Pakistan

    Bachelor of Science (BS)
    University of Engineering and Technology (UET)
    Mechatronics Engineering
    • Thesis: Flow and Pressure Control in Variable Rate Application Sprayer
    • Advisor: Dr. Muhammad Tufail Khan
    • Recipient of the USAID Merit Scholarship (2017–2020)

Experience

  • 2023 - 2025

    Islamabad, Pakistan

    Research Associate
    Radar Research Lab, NUST
    • Led development of RailGuard, a real-time AI safety system that fuses infrared and visible streams for track obstacle detection; introduced a novel detection-guided fusion approach that directly optimizes images for downstream detection.
    • Built an open-source RRL 10k paired annotated IR–RGB dataset and achieved SOTA accuracy–efficiency trade-off (AP@0.5: 0.751) with real-time edge inference (2.5 ms Tesla T4 GPU / 3.0 ms Jetson Orin Nano, 0.04M params), reducing false negatives in adverse conditions and supporting driver-assist deployment (manuscript under review).
  • 2022 - 2023

    Islamabad, Pakistan

    Machine Learning Engineer
    Web Solutions Plus
    • Trained YOLOv5 on 1M+ annotated images across five classes (person, head, car, trolley, falling person), achieving a 7.5% improvement in F1-score over the baseline; deployed the model on NVIDIA Jetson Nano for edge inference.
    • Redesigned the YOLOv5 backbone to reduce redundant computation, delivering a 27% throughput improvement on NVIDIA RTX 3090 and a 3 FPS gain on Axis communication cameras.
    • Integrated a centroid-based re-identification module into StrongSORT, reducing identity switches in occluded multi-person tracking scenarios and improving downstream surveillance accuracy.
  • 2021 - 2021

    Peshawar, Pakistan

    Machine Learning Intern
    National Center of Robotics and Automation (NCRA) Lab
    • Trained an SSD model on a maize crop dataset, achieving an mAP@0.5 of 0.81, and deployed it on a precision agriculture sprayer for targeted pesticide application.
    • Developed a custom CNN architecture to classify maize crop and weed with 97% accuracy.

Awards

  • 2025
    Best Paper Award
    ComTech 2025

    Awarded for the paper “RAG Powered LLMs for QA — Evolution, Challenges, Applications, and Future Directions.”

  • 2023
    Prime Minister High Achievers Award
    NUST

    Awarded in recognition of outstanding academic performance during MS studies at NUST.

  • 2023
    NTF Merit Scholarship
    NUST

    National Technology Fund merit scholarship awarded for academic excellence at NUST.

  • 2017
    USAID Merit Scholarship
    UET Peshawar

    Merit-based scholarship awarded by USAID for undergraduate studies at UET Peshawar (2017–2020).

  • 2013
    KPK Government Scholarship
    GCT Attock

    Provincial government scholarship awarded for academic excellence.

Publications

  • 2025
    RAG Powered LLMs for QA: Evolution, Challenges, Applications, and Future Directions
    2025 International Conference on Communication Technologies (ComTech), IEEE

    A comprehensive review of retrieval-augmented generation (RAG) for LLM-based question answering, covering evolution, building blocks, challenges, and future directions.

  • 2025
    3D SegUX-Net: Multi-Modal MRI Segmentation Using Large Kernels
    Computerized Medical Imaging and Graphics (CMIG) — Under Review

    Proposes a novel U-shaped encoder-decoder architecture using large kernel depth-wise convolution for volumetric biomedical image segmentation, achieving SOTA on BraTS 2019/2020/2023 and BTCV benchmarks.

  • 2025
    RailGuard: A Detection-Guided Infrared and Visible Image Fusion Framework for Enhanced Rail Safety
    IEEE Transactions on Vehicular Technology — Under Review

    Introduces a joint image fusion and semantic segmentation framework optimised for edge devices, achieving real-time inference on Jetson Orin Nano for railway hazard detection.

  • 2022
    Vehicle Recognition using Multi-Layer Perceptron and SMOTE Technique
    2022 2nd International Conference of Smart Systems and Emerging Technologies (SMARTTECH), IEEE

    Proposes an MLP-based vehicle recognition system using SMOTE for class imbalance, achieving 86.02% classification accuracy on the UCI vehicle dataset.

Skills

Languages: Python, C/C++, MATLAB, R
ML Frameworks: PyTorch, TensorFlow, Scikit-learn, Keras, MONAI, NLTK
Developer Tools: Git, Docker, Google Cloud Platform, VS Code, PyCharm, Jupyter Lab
Libraries: NumPy, Pandas, OpenCV, ITK, Matplotlib, Seaborn, SciPy, SpaCy

Languages

Urdu : Native speaker
English : Fluent

Interests

Interests: AI, Computer Vision, Medical Imaging, Large Language Models, Agentic AI, Reinforcement Learning, Physics-Informed Deep Learning, Generative Models

Certificates

  • Deep Learning Specialization - Coursera — DeepLearning.AI
  • Machine Learning - Coursera — Stanford University
  • TensorFlow in Practice Specialization - Coursera — DeepLearning.AI
  • Mathematics for Machine Learning Specialization - Coursera — Imperial College London
  • Generative AI with Large Language Models - Coursera — DeepLearning.AI
  • Introduction to ML in Production - Coursera — DeepLearning.AI
  • AI for Medical Diagnosis - Coursera — DeepLearning.AI

Projects

  • 3D SegUX-Net: Hybrid Neural Network for Brain Tumor Segmentation
    • Designed a novel U-shaped encoder-decoder integrating large-kernel depth-wise convolution and point-wise convolution to expand receptive fields for volumetric MRI segmentation without sacrificing computational efficiency.
    • Outperformed 10 state-of-the-art models on BraTS 2023: +2.18% Mean Dice over SwinUNETR and +0.29% over SegResNet, establishing a new benchmark for hybrid CNN-transformer medical segmentation.
  • Foundcog Infants Multi-band fMRI Reconstruction
    • Developed a high-performance Split-Slice GRAPPA reconstruction pipeline for multiband fMRI k-space data, enabling efficient reconstruction of large-scale neuroimaging datasets comprising 139 infant subjects, over 400,000 volumes, and 3.6 million raw multiband slices.
    • Established an fMRI reconstruction framework that provides clean, artifact-aware inputs for downstream motion modeling in k-space, building upon the reconstruction pipeline and forming the foundation for ongoing PhD work on joint motion correction and reconstruction to improve robustness in motion-corrupted infant and adult datasets.
  • Selected Additional Projects
    • Chest Radiograph Recognition and Grad-CAM Localisation.
    • Diffusion-based transformer model to denoise images with text prompt guidance.
    • RAG-powered LLM chatbot for SINES NUST, integrating document retrieval with GPT-based generation.
    • Sentence grammar classification with end-to-end MLOps pipeline (CI/CD, model registry, monitoring).
    • Multi-layer Perceptron built from scratch using NumPy, including backpropagation and regularisation.

References

  • Professor Rhodri Cusack

    Thomas Mitchell Professor of Cognitive Neuroscience, Psychology. Director of TCIN, Trinity Institute of Neurosciences (TCIN). Email: cusackrh@tcd.ie